Detailed information of SNP:
|
SNP ID:
sf1208635513(Gbrowse)
Chromosome: chr12 Position: 8635513 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1378 | 97.02% | 2.98% |
| All Indica | 762 | 94.88% | 5.12% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 365 | 96.99% | 3.01% |
| Indica II | 204 | 91.67% | 8.33% |
| Indica Intermediate | 193 | 94.30% | 5.70% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208635513 | C->G | LOC_Os12g15140(LOC_Os12g15140.1) | Non-Synonymous SNP |