Detailed information of SNP:
|
SNP ID:
sf1208635923(Gbrowse)
Chromosome: chr12 Position: 8635923 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1378 | 96.95% | 3.05% |
| All Indica | 766 | 95.56% | 4.44% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 63 | 90.48% | 9.52% |
| Indica I | 367 | 95.64% | 4.36% |
| Indica II | 201 | 95.52% | 4.48% |
| Indica Intermediate | 198 | 95.45% | 4.55% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208635923 | G->A | LOC_Os12g15140(LOC_Os12g15140.1) | Non-Synonymous SNP |