Detailed information of SNP:
|
SNP ID:
sf1208636012(Gbrowse)
Chromosome: chr12 Position: 8636012 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1296 | 90.97% | 9.03% |
| All Indica | 705 | 88.23% | 11.77% |
| All Japonica | 489 | 96.93% | 3.07% |
| Aus | 54 | 77.78% | 22.22% |
| Indica I | 343 | 93.59% | 6.41% |
| Indica II | 181 | 84.53% | 15.47% |
| Indica Intermediate | 181 | 81.77% | 18.23% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 86 | 84.88% | 15.12% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 12 | 66.67% | 33.33% |
| Intermediate | 36 | 91.67% | 8.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208636012 | C->T | LOC_Os12g15140(LOC_Os12g15140.1) | Synonymous |