Detailed information of SNP:
|
SNP ID:
sf1208636173(Gbrowse)
Chromosome: chr12 Position: 8636173 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1310 | 84.81% | 15.19% |
| All Indica | 718 | 79.25% | 20.75% |
| All Japonica | 488 | 94.88% | 5.12% |
| Aus | 54 | 72.22% | 27.78% |
| Indica I | 354 | 82.20% | 17.80% |
| Indica II | 189 | 78.31% | 21.69% |
| Indica Intermediate | 175 | 74.29% | 25.71% |
| Temperate Japonica | 333 | 95.80% | 4.20% |
| Tropical Japonica | 87 | 90.80% | 9.20% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 12 | 75.00% | 25.00% |
| Intermediate | 38 | 81.58% | 18.42% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208636173 | T->C | LOC_Os12g15140(LOC_Os12g15140.1) | Non-Synonymous SNP |