Detailed information of SNP:
|
SNP ID:
sf1208645775(Gbrowse)
Chromosome: chr12 Position: 8645775 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 88.50% | 11.50% |
| All Indica | 782 | 81.20% | 18.80% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 365 | 86.03% | 13.97% |
| Indica II | 208 | 84.13% | 15.87% |
| Indica Intermediate | 209 | 69.86% | 30.14% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208645775 | C->T | INTERGENIC | None |