Detailed information of SNP:
|
SNP ID:
sf1208656710(Gbrowse)
Chromosome: chr12 Position: 8656710 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1375 | 67.27% | 32.73% |
| All Indica | 760 | 73.16% | 26.84% |
| All Japonica | 494 | 54.45% | 45.55% |
| Aus | 65 | 87.69% | 12.31% |
| Indica I | 355 | 65.35% | 34.65% |
| Indica II | 208 | 79.33% | 20.67% |
| Indica Intermediate | 197 | 80.71% | 19.29% |
| Temperate Japonica | 332 | 38.55% | 61.45% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208656710 | T->C | INTERGENIC | None |