Detailed information of SNP:
|
SNP ID:
sf1208690711(Gbrowse)
Chromosome: chr12 Position: 8690711 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1390 | 59.71% | 40.29% |
| All Indica | 787 | 94.41% | 5.59% |
| All Japonica | 491 | 1.02% | 98.98% |
| Aus | 65 | 89.23% | 10.77% |
| Indica I | 370 | 96.76% | 3.24% |
| Indica II | 210 | 92.38% | 7.62% |
| Indica Intermediate | 207 | 92.27% | 7.73% |
| Temperate Japonica | 331 | 0.60% | 99.40% |
| Tropical Japonica | 92 | 1.09% | 98.91% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 7 | 28.57% | 71.43% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208690711 | G->A | INTERGENIC | None |