Detailed information of SNP:
|
SNP ID:
sf1208702486(Gbrowse)
Chromosome: chr12 Position: 8702486 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 79.03% | 20.97% |
| All Indica | 793 | 69.48% | 30.52% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 62 | 53.23% | 46.77% |
| Indica I | 372 | 65.32% | 34.68% |
| Indica II | 211 | 66.82% | 33.18% |
| Indica Intermediate | 210 | 79.52% | 20.48% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208702486 | G->T | INTERGENIC | None |