Detailed information of SNP:
|
SNP ID:
sf1208706018(Gbrowse)
Chromosome: chr12 Position: 8706018 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1383 | 94.79% | 5.21% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 462 | 85.06% | 14.94% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 304 | 77.96% | 22.04% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 96.92% | 3.08% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208706018 | A->C | INTERGENIC | None |