Detailed information of SNP:
|
SNP ID:
sf1208709171(Gbrowse)
Chromosome: chr12 Position: 8709171 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 74.72% | 25.28% |
| All Indica | 793 | 83.23% | 16.77% |
| All Japonica | 497 | 58.75% | 41.25% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 374 | 75.94% | 24.06% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 206 | 87.86% | 12.14% |
| Temperate Japonica | 335 | 74.03% | 25.97% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208709171 | C->G | INTERGENIC | None |