Detailed information of SNP:
|
SNP ID:
sf1208763299(Gbrowse)
Chromosome: chr12 Position: 8763299 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 90.97% | 9.03% |
| All Indica | 798 | 85.59% | 14.41% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 78.07% | 21.93% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208763299 | T->C | LOC_Os12g15350(LOC_Os12g15350.1) | Synonymous |