Detailed information of SNP:
|
SNP ID:
sf1208766606(Gbrowse)
Chromosome: chr12 Position: 8766606 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1364 | 93.55% | 6.45% |
| All Indica | 756 | 90.21% | 9.79% |
| All Japonica | 491 | 99.59% | 0.41% |
| Aus | 64 | 85.94% | 14.06% |
| Indica I | 353 | 92.63% | 7.37% |
| Indica II | 203 | 87.19% | 12.81% |
| Indica Intermediate | 200 | 89.00% | 11.00% |
| Temperate Japonica | 331 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208766606 | G->T | LOC_Os12g15350(LOC_Os12g15350.1) | Non-Synonymous SNP |