Detailed information of SNP:
|
SNP ID:
sf1208772257(Gbrowse)
Chromosome: chr12 Position: 8772257 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 90.32% | 9.68% |
| All Indica | 797 | 83.81% | 16.19% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 76.47% | 23.53% |
| Indica II | 212 | 91.51% | 8.49% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208772257 | T->C | LOC_Os12g15370(LOC_Os12g15370.1) | INTRON |