Detailed information of SNP:
|
SNP ID:
sf1208772367(Gbrowse)
Chromosome: chr12 Position: 8772367 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 83.70% | 16.30% |
| All Indica | 798 | 74.69% | 25.31% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 66 | 74.24% | 25.76% |
| Indica I | 375 | 69.60% | 30.40% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 210 | 70.48% | 29.52% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208772367 | C->A | LOC_Os12g15370(LOC_Os12g15370.1) | Non-Synonymous SNP |