Detailed information of SNP:
|
SNP ID:
sf1208777612(Gbrowse)
Chromosome: chr12 Position: 8777612 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1379 | 73.02% | 26.98% |
| All Indica | 763 | 60.81% | 39.19% |
| All Japonica | 496 | 96.98% | 3.02% |
| Aus | 64 | 31.25% | 68.75% |
| Indica I | 357 | 57.70% | 42.30% |
| Indica II | 205 | 58.54% | 41.46% |
| Indica Intermediate | 201 | 68.66% | 31.34% |
| Temperate Japonica | 334 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208777612 | T->C | INTERGENIC | None |