Detailed information of SNP:
|
SNP ID:
sf1208802250(Gbrowse)
Chromosome: chr12 Position: 8802250 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 95.38% | 4.62% |
| All Indica | 766 | 92.17% | 7.83% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 364 | 97.25% | 2.75% |
| Indica II | 198 | 80.30% | 19.70% |
| Indica Intermediate | 204 | 94.61% | 5.39% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208802250 | C->T | LOC_Os12g15420(LOC_Os12g15420.1) | INTRON |