Detailed information of SNP:
|
SNP ID:
sf1208815307(Gbrowse)
Chromosome: chr12 Position: 8815307 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 53.07% | 46.93% |
| All Indica | 799 | 80.48% | 19.52% |
| All Japonica | 497 | 4.23% | 95.77% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 74.40% | 25.60% |
| Indica II | 213 | 84.51% | 15.49% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208815307 | G->C | INTERGENIC | None |