Detailed information of SNP:
|
SNP ID:
sf1208825647(Gbrowse)
Chromosome: chr12 Position: 8825647 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1250 | 96.16% | 3.84% |
| All Indica | 793 | 100.00% | 0.00% |
| All Japonica | 339 | 87.02% | 12.98% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 210 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 225 | 86.22% | 13.78% |
| Tropical Japonica | 69 | 98.55% | 1.45% |
| Japonica Intermediate | 45 | 73.33% | 26.67% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 37 | 97.30% | 2.70% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208825647 | C->T | INTERGENIC | None |