Detailed information of SNP:
|
SNP ID:
sf1208855613(Gbrowse)
Chromosome: chr12 Position: 8855613 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1377 | 88.16% | 11.84% |
| All Indica | 760 | 80.79% | 19.21% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 358 | 80.73% | 19.27% |
| Indica II | 203 | 85.71% | 14.29% |
| Indica Intermediate | 199 | 75.88% | 24.12% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208855613 | C->T | INTERGENIC | None |