Detailed information of SNP:
|
SNP ID:
sf1208917356(Gbrowse)
Chromosome: chr12 Position: 8917356 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 83.71% | 16.29% |
| All Indica | 795 | 73.21% | 26.79% |
| All Japonica | 493 | 98.38% | 1.62% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 374 | 66.58% | 33.42% |
| Indica II | 211 | 75.36% | 24.64% |
| Indica Intermediate | 210 | 82.86% | 17.14% |
| Temperate Japonica | 331 | 98.19% | 1.81% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208917356 | C->T | LOC_Os12g15620(LOC_Os12g15620.1) | Synonymous |