Detailed information of SNP:
|
SNP ID:
sf1208917663(Gbrowse)
Chromosome: chr12 Position: 8917663 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 85.93% | 14.07% |
| All Indica | 797 | 76.66% | 23.34% |
| All Japonica | 495 | 98.79% | 1.21% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 373 | 72.65% | 27.35% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 333 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208917663 | A->G | LOC_Os12g15620(LOC_Os12g15620.1) | Non-Synonymous SNP |