Detailed information of SNP:
|
SNP ID:
sf1208945063(Gbrowse)
Chromosome: chr12 Position: 8945063 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1361 | 58.41% | 41.59% |
| All Indica | 745 | 91.81% | 8.19% |
| All Japonica | 496 | 4.23% | 95.77% |
| Aus | 65 | 86.15% | 13.85% |
| Indica I | 344 | 89.83% | 10.17% |
| Indica II | 203 | 93.10% | 6.90% |
| Indica Intermediate | 198 | 93.94% | 6.06% |
| Temperate Japonica | 334 | 4.49% | 95.51% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208945063 | A->G | INTERGENIC | None |