Detailed information of SNP:
|
SNP ID:
sf1208948541(Gbrowse)
Chromosome: chr12 Position: 8948541 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 63.44% | 36.56% |
| All Indica | 787 | 45.87% | 54.13% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 66 | 21.21% | 78.79% |
| Indica I | 368 | 54.62% | 45.38% |
| Indica II | 209 | 42.11% | 57.89% |
| Indica Intermediate | 210 | 34.29% | 65.71% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208948541 | T->C | LOC_Os12g15670(LOC_Os12g15670.1) | INTRON |