Detailed information of SNP:
|
SNP ID:
sf1208957284(Gbrowse)
Chromosome: chr12 Position: 8957284 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 70.18% | 29.82% |
| All Indica | 797 | 50.94% | 49.06% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 374 | 39.84% | 60.16% |
| Indica II | 213 | 54.93% | 45.07% |
| Indica Intermediate | 210 | 66.67% | 33.33% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208957284 | C->G | INTERGENIC | None |