Detailed information of SNP:
|
SNP ID:
sf1208968025(Gbrowse)
Chromosome: chr12 Position: 8968025 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1402 | 59.49% | 40.51% |
| All Indica | 783 | 91.32% | 8.68% |
| All Japonica | 497 | 3.82% | 96.18% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 370 | 92.43% | 7.57% |
| Indica II | 208 | 91.83% | 8.17% |
| Indica Intermediate | 205 | 88.78% | 11.22% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208968025 | G->A | LOC_Os12g15700(LOC_Os12g15700.1) | Non-Synonymous SNP |