Detailed information of SNP:
|
SNP ID:
sf1208972414(Gbrowse)
Chromosome: chr12 Position: 8972414 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 96.75% | 3.25% |
| All Indica | 796 | 94.22% | 5.78% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 93.03% | 6.97% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208972414 | A->G | INTERGENIC | None |