Detailed information of SNP:
|
SNP ID:
sf1208973946(Gbrowse)
Chromosome: chr12 Position: 8973946 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 96.87% | 3.13% |
| All Indica | 784 | 94.64% | 5.36% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 369 | 94.58% | 5.42% |
| Indica II | 208 | 94.23% | 5.77% |
| Indica Intermediate | 207 | 95.17% | 4.83% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208973946 | A->G | INTERGENIC | None |