Detailed information of SNP:
|
SNP ID:
sf1208974876(Gbrowse)
Chromosome: chr12 Position: 8974876 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 57.52% | 42.48% |
| All Indica | 779 | 88.19% | 11.81% |
| All Japonica | 495 | 3.64% | 96.36% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 361 | 84.76% | 15.24% |
| Indica II | 209 | 91.39% | 8.61% |
| Indica Intermediate | 209 | 90.91% | 9.09% |
| Temperate Japonica | 333 | 3.90% | 96.10% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208974876 | T->C | INTERGENIC | None |