Detailed information of SNP:
|
SNP ID:
sf1208983121(Gbrowse)
Chromosome: chr12 Position: 8983121 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1360 | 54.04% | 45.96% |
| All Indica | 745 | 83.76% | 16.24% |
| All Japonica | 495 | 3.23% | 96.77% |
| Aus | 64 | 92.19% | 7.81% |
| Indica I | 338 | 81.66% | 18.34% |
| Indica II | 206 | 82.52% | 17.48% |
| Indica Intermediate | 201 | 88.56% | 11.44% |
| Temperate Japonica | 333 | 2.70% | 97.30% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208983121 | T->C | INTERGENIC | None |