Detailed information of SNP:



SNP ID: sf1209010391(Gbrowse)

Chromosome: chr12

Position: 9010391
Major allele: C

Minor allele: A

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of A(minor allele)
All1410 71.84% 28.16%
All Indica791 52.34% 47.66%
All Japonica497 97.79% 2.21%
Aus66 96.97% 3.03%
Indica I371 63.34% 36.66%
Indica II211 47.87% 52.13%
Indica Intermediate209 37.32% 62.68%
Temperate Japonica335 97.61% 2.39%
Tropical Japonica94 96.81% 3.19%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 83.33% 16.67%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1209010391 C->A LOC_Os12g15790(LOC_Os12g15790.1) INTRON