Detailed information of SNP:
|
SNP ID:
sf1209010391(Gbrowse)
Chromosome: chr12 Position: 9010391 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 71.84% | 28.16% |
| All Indica | 791 | 52.34% | 47.66% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 371 | 63.34% | 36.66% |
| Indica II | 211 | 47.87% | 52.13% |
| Indica Intermediate | 209 | 37.32% | 62.68% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209010391 | C->A | LOC_Os12g15790(LOC_Os12g15790.1) | INTRON |