Detailed information of SNP:
|
SNP ID:
sf1209019398(Gbrowse)
Chromosome: chr12 Position: 9019398 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1367 | 95.98% | 4.02% |
| All Indica | 752 | 94.02% | 5.98% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 63 | 88.89% | 11.11% |
| Indica I | 348 | 94.83% | 5.17% |
| Indica II | 209 | 91.39% | 8.61% |
| Indica Intermediate | 195 | 95.38% | 4.62% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209019398 | T->A | INTERGENIC | None |