Detailed information of SNP:
|
SNP ID:
sf1209045943(Gbrowse)
Chromosome: chr12 Position: 9045943 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 69.47% | 30.53% |
| All Indica | 795 | 55.97% | 44.03% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 374 | 63.37% | 36.63% |
| Indica II | 211 | 54.98% | 45.02% |
| Indica Intermediate | 210 | 43.81% | 56.19% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209045943 | G->A | INTERGENIC | None |