Detailed information of SNP:
|
SNP ID:
sf1209046971(Gbrowse)
Chromosome: chr12 Position: 9046971 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 59.66% | 40.34% |
| All Indica | 795 | 91.07% | 8.93% |
| All Japonica | 497 | 4.02% | 95.98% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 372 | 90.32% | 9.68% |
| Indica II | 212 | 90.57% | 9.43% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209046971 | A->G | LOC_Os12g15880(LOC_Os12g15880.1) | INTRON |