Detailed information of SNP:
|
SNP ID:
sf1209047823(Gbrowse)
Chromosome: chr12 Position: 9047823 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 58.91% | 41.09% |
| All Indica | 794 | 89.55% | 10.45% |
| All Japonica | 497 | 4.43% | 95.57% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 372 | 88.44% | 11.56% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 209 | 91.39% | 8.61% |
| Temperate Japonica | 335 | 4.78% | 95.22% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209047823 | T->C | LOC_Os12g15880(LOC_Os12g15880.1) | Non-Synonymous SNP |