Detailed information of SNP:
|
SNP ID:
sf1209049046(Gbrowse)
Chromosome: chr12 Position: 9049046 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1385 | 75.23% | 24.77% |
| All Indica | 776 | 63.66% | 36.34% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 58 | 39.66% | 60.34% |
| Indica I | 364 | 68.96% | 31.04% |
| Indica II | 206 | 65.05% | 34.95% |
| Indica Intermediate | 206 | 52.91% | 47.09% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 12 | 41.67% | 58.33% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209049046 | G->A | LOC_Os12g15890(LOC_Os12g15890.1) | Non-Synonymous SNP |