Detailed information of SNP:
|
SNP ID:
sf1209051464(Gbrowse)
Chromosome: chr12 Position: 9051464 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1397 | 50.04% | 49.96% |
| All Indica | 780 | 23.85% | 76.15% |
| All Japonica | 494 | 97.17% | 2.83% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 363 | 35.54% | 64.46% |
| Indica II | 211 | 14.22% | 85.78% |
| Indica Intermediate | 206 | 13.11% | 86.89% |
| Temperate Japonica | 332 | 97.59% | 2.41% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209051464 | A->G | LOC_Os12g15900(LOC_Os12g15900.1) | Non-Synonymous SNP |