Detailed information of SNP:
|
SNP ID:
sf1209051871(Gbrowse)
Chromosome: chr12 Position: 9051871 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1392 | 53.16% | 46.84% |
| All Indica | 774 | 29.59% | 70.41% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 66 | 6.06% | 93.94% |
| Indica I | 357 | 41.46% | 58.54% |
| Indica II | 210 | 20.00% | 80.00% |
| Indica Intermediate | 207 | 18.84% | 81.16% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209051871 | A->G | LOC_Os12g15900(LOC_Os12g15900.1) | Non-Synonymous SNP |