Detailed information of SNP:
|
SNP ID:
sf1209053217(Gbrowse)
Chromosome: chr12 Position: 9053217 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 91.82% | 8.18% |
| All Indica | 788 | 87.44% | 12.56% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 368 | 88.86% | 11.14% |
| Indica II | 210 | 85.24% | 14.76% |
| Indica Intermediate | 210 | 87.14% | 12.86% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209053217 | G->T | LOC_Os12g15910(LOC_Os12g15910.1) | Non-Synonymous SNP |