Detailed information of SNP:
|
SNP ID:
sf1209053682(Gbrowse)
Chromosome: chr12 Position: 9053682 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 54.49% | 45.51% |
| All Indica | 784 | 32.14% | 67.86% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 367 | 44.96% | 55.04% |
| Indica II | 208 | 23.56% | 76.44% |
| Indica Intermediate | 209 | 18.18% | 81.82% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209053682 | T->C | LOC_Os12g15910(LOC_Os12g15910.1) | Synonymous |