Detailed information of SNP:
|
SNP ID:
sf1209061500(Gbrowse)
Chromosome: chr12 Position: 9061500 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 64.62% | 35.38% |
| All Indica | 796 | 42.96% | 57.04% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 49.20% | 50.80% |
| Indica II | 212 | 42.92% | 57.08% |
| Indica Intermediate | 210 | 31.90% | 68.10% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209061500 | G->A | INTERGENIC | None |