Detailed information of SNP:
|
SNP ID:
sf1209063930(Gbrowse)
Chromosome: chr12 Position: 9063930 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1342 | 93.07% | 6.93% |
| All Indica | 729 | 87.93% | 12.07% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 323 | 84.21% | 15.79% |
| Indica II | 206 | 92.72% | 7.28% |
| Indica Intermediate | 200 | 89.00% | 11.00% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 94.44% | 5.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209063930 | A->G | INTERGENIC | None |