Detailed information of SNP:
|
SNP ID:
sf1209066099(Gbrowse)
Chromosome: chr12 Position: 9066099 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 52.26% | 47.74% |
| All Indica | 798 | 80.95% | 19.05% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 374 | 79.41% | 20.59% |
| Indica II | 213 | 80.28% | 19.72% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209066099 | T->C | INTERGENIC | None |