Detailed information of SNP:
|
SNP ID:
sf1209078704(Gbrowse)
Chromosome: chr12 Position: 9078704 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 62.58% | 37.42% |
| All Indica | 793 | 96.22% | 3.78% |
| All Japonica | 496 | 4.23% | 95.77% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 208 | 95.19% | 4.81% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 334 | 4.49% | 95.51% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209078704 | A->G | INTERGENIC | None |