Detailed information of SNP:
|
SNP ID:
sf1209080649(Gbrowse)
Chromosome: chr12 Position: 9080649 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 51.69% | 48.31% |
| All Indica | 796 | 79.27% | 20.73% |
| All Japonica | 497 | 2.82% | 97.18% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 372 | 73.66% | 26.34% |
| Indica II | 213 | 84.04% | 15.96% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209080649 | T->G | INTERGENIC | None |