Detailed information of SNP:
|
SNP ID:
sf1209092593(Gbrowse)
Chromosome: chr12 Position: 9092593 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 51.73% | 48.27% |
| All Indica | 799 | 81.23% | 18.77% |
| All Japonica | 497 | 2.82% | 97.18% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 76.53% | 23.47% |
| Indica II | 213 | 84.51% | 15.49% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209092593 | C->T | INTERGENIC | None |