Detailed information of SNP:
|
SNP ID:
sf1209150619(Gbrowse)
Chromosome: chr12 Position: 9150619 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 62.98% | 37.02% |
| All Indica | 798 | 96.49% | 3.51% |
| All Japonica | 497 | 4.43% | 95.57% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 96.79% | 3.21% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 4.78% | 95.22% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209150619 | A->C | INTERGENIC | None |