Detailed information of SNP:
|
SNP ID:
sf1209151171(Gbrowse)
Chromosome: chr12 Position: 9151171 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 56.81% | 43.19% |
| All Indica | 790 | 87.34% | 12.66% |
| All Japonica | 497 | 3.82% | 96.18% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 370 | 85.14% | 14.86% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 207 | 88.41% | 11.59% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209151171 | T->A | INTERGENIC | None |