Detailed information of SNP:
|
SNP ID:
sf1209151888(Gbrowse)
Chromosome: chr12 Position: 9151888 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1407 | 96.87% | 3.13% |
| All Indica | 795 | 95.97% | 4.03% |
| All Japonica | 491 | 98.57% | 1.43% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 373 | 99.20% | 0.80% |
| Indica II | 211 | 91.94% | 8.06% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 329 | 98.18% | 1.82% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209151888 | G->C | LOC_Os12g16060(LOC_Os12g16060.1) | Non-Synonymous SNP |