Detailed information of SNP:
|
SNP ID:
sf1209155509(Gbrowse)
Chromosome: chr12 Position: 9155509 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 96.36% | 3.64% |
| All Indica | 795 | 95.85% | 4.15% |
| All Japonica | 493 | 98.38% | 1.62% |
| Aus | 63 | 84.13% | 15.87% |
| Indica I | 372 | 99.46% | 0.54% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 331 | 97.58% | 2.42% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209155509 | C->G | LOC_Os12g16060(LOC_Os12g16060.1) | Non-Synonymous SNP |