Detailed information of SNP:
SNP ID:
sf1209157171(Gbrowse)
Chromosome: chr12 Position: 9157171 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1418 | 95.06% | 4.94% |
All Indica | 798 | 92.23% | 7.77% |
All Japonica | 497 | 98.39% | 1.61% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 374 | 93.58% | 6.42% |
Indica II | 213 | 90.61% | 9.39% |
Indica Intermediate | 211 | 91.47% | 8.53% |
Temperate Japonica | 335 | 98.21% | 1.79% |
Tropical Japonica | 94 | 97.87% | 2.13% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1209157171 | G->A | LOC_Os12g16060(LOC_Os12g16060.1) | INTRON |